Welcome to GraTools’s documentation!
About this package
Gratools is a powerful tool for analyzing and handling pangenome graphs quickly, whatever the model ‘and therefor the size and the complexity of the GFA file). It allows users to extract sequences or subgraphs, convert graphs into FASTA sequences, and identify shared and specific nodes across samples. With multi-threading support and flexible logging capabilities, Gratools is an efficient solution for pangenome graph analysis. Key commands include:
extract_sub_graph for filtering regions,
get_fasta for converting graphs into FASTA format,
and segments_info for identifying common and specific nodes across samples.
Additionally, it provides essential statistics for chromosomes and samples data, and allows faster processing through multi-threading.
Gratools is mandatory for managing and analyzing pangenome graphs, supporting both the visualization of pangenomic data and the analysis of its embedded genetic variation.
GraTools Usage